Jan Gogarten is a wildlife disease ecologist who recently founded the Evolutionary Community Ecology Research Group at the Helmholtz Institute for One Health in Greifswald. He was elected to the Global Young Academy in 2023 and has showcased a commitment to increasing the diversity of perspectives active in academia. He has worked in two biodiversity hotspots in Uganda and the Ivory Coast for the last decade, with publications on a broad range of topics across the fields of ecology and evolutionary biology, as well as microbiology and virology, highlighting his commitment to the transdisciplinarity needed for developing the One Health framework. The emergence of pathogens from ecosystems can have drastic consequences for humanity and at the same time, disease plays a critical role in regulating wildlife populations and their long-term conservation. Jan’s research seeks to build a basis for conservation policy aimed at living with biodiversity in a sustainable manner, both by understanding the processes that influence and maintain animal and microbial diversity in ecosystems, while developing strategies to understand and mitigate disease emergence in human and wildlife populations. To this end, he has developed an environmental DNA toolkit for studying hosts and pathogens at landscape scales, as well as non-invasive approaches for generating genomic data from hosts and their pathogens.

Jan Gogarten is broadly interested in health topics and especially in the factors influencing the composition of communities of hosts across landscapes, but also the communities of microorganisms within these hosts. He combines these types of data provides to provide insights into disease emergence and the transmission process between hosts and species, particularly coupling this with a phylogenetic scaffolding. He often works with wild non-human primates and utilizes a diverse molecular toolkit including metabarcoding, environmental DNA, and hybridization capture.

Jan studied Biology and Anthropology at McGill in Canada and went on to a master’s degree in Biological Anthropology at Stony Brook.  ​He completed his PhD in Biology at McGill in 2017 with Drs. Jonathan Davies and Colin Chapman. During his PhD he was affiliated with the RKI and the MPI for Evolutionary Anthropology and worked closely with the Tai Chimpanzee Project and Drs. Roman Wittig, Fabian Leendertz, and Sébastien Calvignac-Spencer. He went on to a postdoc position at Columbia University working with Drs. Thomas Briese and Ian Lipkin, followed by a postdoc at the RKI as part of the DFG research group ‘Sociality and Health in Primates’ exploring the interplay of sociality and microbial diversity working with Sébastien Calvignac-Spencer.

Complete list of publications
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Select publications. *Indicates authors that contributed equally to the manuscript. ^#Indicates corresponding author

Jahan M, Lagostina L, Gräßle T, Couacy-Hymann E, Kouadio L, Kouakou VK, Krou HA, Mossoun A, Patrono LV, Pléh K, Steiner JA, Yves N, Leendertz FH, Calvignac-Spencer S*^#, Gogarten JF*^#. (2023) Fly iDNA suggests strict reliance of the causative agent of sylvatic anthrax on rainforest ecosystems. Environmental DNA.

Gogarten JF^#. (2022) Roles for non-human primate-associated phage diversity in improving medicine and public health. Evolution, Medicine, and Public Health. 10: 123-129.

Gogarten JF^#, Jahan M, Calvignac-Spencer S*, Chapman CA*, Goldberg TL*, Leendertz FH*, Rothman JM*. (2022) The cost of living in larger primate groups includes higher fly densities. EcoHealth. 19: 290-298.

Gogarten JF^#, Rühlemann M, Archie E, Tung J, Akoua-Koffi C, Bang C, Deschner T, Muyembe-Tamfun J-J, Robbins MM, Schubert G, Surbeck M, Wittig RM, Zuberbühler K, Baines JF, Franke A, Leendertz FH, Calvignac-Spencer S^#. (2021) Primate phageomes are structured by superhost phylogeny and environment. Proceedings of the National Academy of Sciences of the United States of America. 118: e2013535118.

Gogarten JF*, Hoffmann C*, Arandjelovic M, Sachse A, Merkel K, Dieguez P, Boesch C, Agbor A, Angedakin S, Brazzola G, Corogenes K, Jones S, Langergraber KE, Lee K, Marrocoli S, Murai M, Sommer V, Zuberbuehler K, Kühl H, Leendertz FH, Calvignac-Spencer S^#. (2020) Fly-derived DNA and camera traps are complementary tools for assessing mammalian biodiversity. Environmental DNA. 2: 63-76.

Gogarten JF, Düx A, Mubemba B, Pléh K, Hoffmann C, Mielke A, Müller-Tiburtius J, Sachse A, Wittig RM, Calvignac-Spencer S^#, Leendertz FH^#. (2019) Tropical rainforest flies carrying pathogens form stable associations with social non-human primates. Molecular Ecology. 28: 4242– 4258.

Gogarten JF, Davies TJ, Benjamino J, Gogarten JP, Graf J, Mielke A, Mundry R, Nelson MC, Wittig RM^#, Leendertz FH*^#, Calvignac-Spencer S*^#. (2018) Factors influencing bacterial microbiome composition in a wild non-human primate community in Taï National Park, Côte d’Ivoire. The ISME Journal. 12: 2559-74.

Knauf S*, Gogarten JF*, Schuenemann VJ*, De Nys HM*, Düx A, Strouhal M, Mikalová L, Bos KI, Armstrong R, Batamuzi EK, Chuma IS, Davoust B, Diatta G, Fyumagwa RD, Kazwala RR, Keyyu JD, Lejora IAV, Levasseur A, Liu H, Mayhew MA, Mediannikov O, Raoult D, Wittig RM, Roos C, Leendertz FH, Šmajs D^#, Nieselt K^#, Krause J*, Calvignac-Spencer S*^#. (2018) Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Emerging Microbes and Infections. 7: 157.

Gogarten JF*^#, Jacob AL*, Ghai RR, Rothman JM, Twinomugisha D, Wasserman MD, and Chapman CA. (2015) Group size dynamics over 15+ years in an African forest primate community. Biotropica. 47: 101-112.

Marí Saéz A*, Weiss S*, Nowak K*, Lapeyre V*, Zimmermann F, Düx A, Kühl HS, Kaba M, Regnaut S, Merkel K, Sachse A, Thiesen U, Villányi L, Boesch C, Dabrowski PW, Radonić A, Nitsche A, Leendertz SAJ, Petterson S, Becker S, Krähling V, Couacy-Hymann E, Akoua-Koffi C, Weber N, Schaade L, Fahr J, Borchert M, Gogarten JF*, Calvignac-Spencer S*, Leendertz FH^#. (2015) Zoonotic origin of the West African Ebola epidemic. EMBO Molecular Medicine. 7: 17-23.